Department of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, Texas 78229, United States Howard Hughes Medical Institute, University of Texas Health San ...
This repository contains the code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images". Authors: Kalin Nonchev, Sebastian Dawo, Karina ...
individual incidence function prediction in VLSA models; and prediction interpretation using our Shapley values-based method. Use the following command to load an experiment configuration and train ...
Copyright: © 2023 The Author(s). Published by Elsevier B.V. Deep learning has revolutionized digital pathology, allowing automatic analysis of hematoxylin and eosin ...
As the major microtubule organizing center in animal cells, the centrosome is implicated with human breast tumor in multiple ways, such as promotion of tumor cell immune evasion. Here, we aimed to ...
Proteomics Unit, Department of Biomedicine, University of Bergen, 5020 Bergen, Norway Computational Biology Unit, Department of Informatics, University of Bergen, 5008 Bergen, Norway ...
A further understanding of the molecular mechanism of hepatocellular carcinoma (HCC) is necessary to predict a patient’s prognosis and develop new targeted gene drugs. This study aims to identify ...
We present global cell-level TIL maps and 43 quantitative TIL spatial image features for 1,000 WSIs of The Cancer Genome Atlas patients with breast cancer. For more specific analysis, all the patients ...
Introduced in 2017, the GEPIA (Gene Expression Profiling Interactive Analysis) web server has been a valuable and highly cited resource for gene expression analysis based on tumor and normal samples ...
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