GitHub

Cell-GPS is the Python package and reference implementation for Cophenetic Spatial Topology Embedding (COSTE), a spatial topology analysis framework for spatial omics data.

If you use the Python package, the Windows executable, the R companion package, or the manuscript figure/table code, please cite this preprint.
Frontiers

Convergence-divergence circuits for multimodal integration of innate and learned opponent valences

Valence detection in complex environment is critical for natural behaviors like foraging. Previous studies have explored valence processing in brain regions like lateral horn (LH) and mushroom body ...
Analytics Insight

Essential Python Libraries for Effective Data Manipulation

Nowadays, everyone is familiar with Python as the language used in information technologies and one of the most popular languages in data science and machine learning fields. Amongst these, they ...
PNAS

Computational inference of eIF4F complex function and structure in human cancers

To understand the importance of eIF4F components, we employed computational methods on large public datasets to investigate the impact of positive selection on eIF4F dysregulation in cancer. By ...
GitHub

PDBeurope/protein-cluster-conformers

These scripts can be used to cluster a parsed set of monomeric protein chains via a global conformational change metric based on CA distances. Once the polypeptide chains destined for clustering have ...
Frontiers

PyRAT: An Open-Source Python Library for Animal Behavior Analysis

Here we developed an open-source Python-based library called Python rodent Analysis and Tracking (PyRAT). Our library analyzes tracking data to classify distinct behaviors, estimate traveled distance, ...