Learn how iterative prompting, Python, and Google Colab helped turn a multilingual hreflang mapping project into a scalable workflow.

Gene duplication products also called paralogs are homologous genes originating from a common ancestor gene. In contrast to orthologs, they arise through duplication events and not speciation events 1 ...

Alternative splicing (AS) is a major source of transcriptome diversity in plants, but short-read RNA sequencing (RNA-seq) has limited power for resolving full-length transcripts and complex AS ...

Satellite imagery has enabled global mapping since the launch of Landsat 1 in 1972. But assigning each pixel just one label is no longer sufficient for many applications. Foundation models like ...

As human activities increasingly fragment once-continuous habitats, it becomes ever more critical to understand how these changes impact diversity. Negative frequency-dependent (NFD) selection, a key ...

A python implementation (unoptimized and mainly for proof of concept) can be found in http://github.com/bing-jian/gmmreg-python. Recently, a group of researchers from ...

This package contains Python bindings for parasail. Parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise ...

Viromics produces millions of viral genomes and fragments annually, overwhelming traditional sequence comparison methods. Here we introduce Vclust, an approach that determines average nucleotide ...

This important study addresses the problem of detecting weak similarity between protein sequences, a procedure commonly used to infer homology or assign putative functions to uncharacterized proteins.

To study the contamination of microorganisms in the food industry, pharmaceutical industry, clinical diagnosis, or bacterial taxonomy, accurate identification of species is a key starting point of ...

Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands ...